Jonathan H Badger: search on Z-Library

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1

Microbes and Cancer

Dzutsev, Amiran, Badger, Jonathan H., Perez-Chanona, Ernesto, Roy, Soumen, Salcedo, Rosalba, Smith, Carolyne K., Trinchieri, Giorgio

Journal:

Annual Review of Immunology

Year:

2017

Language:

english

File:

PDF, 2.46 MB

english, 2017

2

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

Chitsaz, Hamidreza, Yee-Greenbaum, Joyclyn L, Tesler, Glenn, Lombardo, Mary-Jane, Dupont, Christopher L, Badger, Jonathan H, Novotny, Mark, Rusch, Douglas B, Fraser, Louise J, Gormley, Niall A, Schulz

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.98 MB

english, 2011

3

A framework for human microbiome research

Methé, Barbara A., Nelson, Karen E., Pop, Mihai, Creasy, Heather H., Giglio, Michelle G., Huttenhower, Curtis, Gevers, Dirk, Petrosino, Joseph F., Abubucker, Sahar, Badger, Jonathan H., Chinwalla, Asi

Journal:

Year:

2012

Language:

english

File:

PDF, 455 KB

english, 2012

4

Cthulhu Macrofasciculumque n. g., n. sp. and Cthylla Microfasciculumque n. g., n. sp., a Newly Identified Lineage of Parabasalian Termite Symbionts

James, Erick R., Okamoto, Noriko, Burki, Fabien, Scheffrahn, Rudolf H., Keeling, Patrick J., Badger, Jonathan H.

Journal:

Year:

2013

Language:

english

File:

PDF, 752 KB

english, 2013

5

Description of soybean aphid (Aphis glycines Matsumura) mitochondrial genome and comparative mitogenomics of Aphididae (Hemiptera: Sternorrhyncha)

Song, Hojun, Donthu, Ravi Kiran, Hall, Richard, Hon, Lawrence, Weber, Everett, Badger, Jonathan H., Giordano, Rosanna

Journal:

Insect Biochemistry and Molecular Biology

Year:

2019

Language:

english

File:

PDF, 4.50 MB

english, 2019

6

The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses

Zeigler Allen, Lisa, McCrow, John P., Ininbergs, Karolina, Dupont, Christopher L., Badger, Jonathan H., Hoffman, Jeffery M., Ekman, Martin, Allen, Andrew E., Bergman, Birgitta, Venter, J. Craig, Weitz

Journal:

Year:

2017

Language:

english

File:

PDF, 1.85 MB

english, 2017

7

Deciphering the Prokaryotic Community and Metabolisms in South African Deep-Mine Biofilms through Antibody Microarrays and Graph Theory

Blanco, Yolanda, Rivas, Luis A., García-Moyano, Antonio, Aguirre, Jacobo, Cruz-Gil, Patricia, Palacín, Arantxa, van Heerden, Esta, Parro, Víctor, Badger, Jonathan H.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.07 MB

english, 2014

8

Traditional Taxonomic Groupings Mask Evolutionary History: A Molecular Phylogeny and New Classification of the Chromodorid Nudibranchs

Johnson, Rebecca Fay, Gosliner, Terrence M., Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.47 MB

english, 2012

9

Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance

Rosshart, Stephan P., Vassallo, Brian G., Angeletti, Davide, Hutchinson, Diane S., Morgan, Andrew P., Takeda, Kazuyo, Hickman, Heather D., McCulloch, John A., Badger, Jonathan H., Ajami, Nadim J., Tri

Journal:

Year:

2017

Language:

english

File:

PDF, 7.63 MB

english, 2017

10

Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

Fouts, Derrick E., Tyler, Heather L., DeBoy, Robert T., Daugherty, Sean, Ren, Qinghu, Badger, Jonathan H., Durkin, Anthony S., Huot, Heather, Shrivastava, Susmita, Kothari, Sagar, Dodson, Robert J., M

Journal:

Year:

2008

Language:

english

File:

PDF, 969 KB

english, 2008

11

A COLLAPSING METHOD FOR THE EFFICIENT RECOVERY OF OPTIMAL EDGES IN PHYLOGENETIC TREES

HU, MICHAEL, KEARNEY, PAUL, BADGER, JONATHAN

Journal:

International Journal of Artificial Intelligence Tools

Year:

2005

Language:

english

File:

PDF, 243 KB

english, 2005

12

Global Diversity and Phylogeny of the Asteroidea (Echinodermata)

Mah, Christopher L., Blake, Daniel B., Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.72 MB

english, 2012

13

Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0

Hansen, Lars H., Bentzon-Tilia, Mikkel, Bentzon-Tilia, Sara, Norman, Anders, Rafty, Louise, Sørensen, Søren J., Badger, Jonathan H.

Journal:

Year:

2011

Language:

english

File:

PDF, 291 KB

english, 2011

14

The Abundance of Pink-Pigmented Facultative Methylotrophs in the Root Zone of Plant Species in Invaded Coastal Sage Scrub Habitat

Irvine, Irina C., Brigham, Christy A., Suding, Katharine N., Martiny, Jennifer B. H., Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 171 KB

english, 2012

15

Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes

Jiménez, Diego Javier, Andreote, Fernando Dini, Chaves, Diego, Montaña, José Salvador, Osorio-Forero, Cesar, Junca, Howard, Zambrano, María Mercedes, Baena, Sandra, Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

16

Culture-Independent Investigation of the Microbiome Associated with the Nematode Acrobeloides maximus

Baquiran, Jean-Paul, Thater, Brian, Sedky, Sammy, De Ley, Paul, Crowley, David, Orwin, Paul M., Badger, Jonathan H.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

17

Bacterial Community Composition in the Gut Content and Ambient Sediment of Sea Cucumber Apostichopus japonicus Revealed by 16S rRNA Gene Pyrosequencing

Gao, Fei, Li, Fenghui, Tan, Jie, Yan, Jingping, Sun, Huiling, Badger, Jonathan H.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.85 MB

english, 2014

18

A Novel Colonial Ciliate Zoothamnium ignavum sp. nov. (Ciliophora, Oligohymenophorea) and Its Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls

Schuster, Lukas, Bright, Monika, Badger, Jonathan H.

Journal:

Year:

2016

Language:

english

File:

PDF, 5.61 MB

english, 2016

19

[IEEE 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) - Chicago, IL, USA (2019.5.19-2019.5.22)] 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) - Lung Nodule Classification Using Combined Deep and Spectral 3D Shape Features

Bashiri, Fereshteh S, Badger, Jonathan C, D'Souza, Roshan M, Yu, Zeyun, Peissig, Peggy

Year:

2019

File:

PDF, 138 KB

2019

20

Genome-Wide Analysis of PDZ Domain Binding Reveals Inherent Functional Overlap within the PDZ Interaction Network

te Velthuis, Aartjan J. W., Sakalis, Philippe A., Fowler, Donald A., Bagowski, Christoph P., Badger, Jonathan

Journal:

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

21

Mineralization of Acephate, a Recalcitrant Organophosphate Insecticide Is Initiated by a Pseudomonad in Environmental Samples

Pinjari, Aleem Basha, Novikov, Boris, Rezenom, Yohannes H., Russell, David H., Wales, Melinda E., Siddavattam, Dayananda, Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 940 KB

english, 2012

22

Metagenomic Profiling of Microbial Composition and Antibiotic Resistance Determinants in Puget Sound

Port, Jesse A., Wallace, James C., Griffith, William C., Faustman, Elaine M., Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

23

The BRIDGE HadCM3 family of climate models: HadCM3@Bristol v1.0

Valdes, Paul J., Armstrong, Edward, Badger, Marcus P. S., Bradshaw, Catherine D., Bragg, Fran, Crucifix, Michel, Davies-Barnard, Taraka, Day, Jonathan J., Farnsworth, Alex, Gordon, Chris, Hopcroft, Pe

Journal:

Geoscientific Model Development

Year:

2017

Language:

english

File:

PDF, 7.34 MB

english, 2017

24

Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347 T (Phylum Nitrospirae )

Bhatnagar, Srijak, Badger, Jonathan H., Madupu, Ramana, Khouri, Hoda M., O’Connor, Elizabeth M., Robb, Frank T., Ward, Naomi L., Eisen, Jonathan A.

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 160 KB

english, 2015

25

A Metastable Equilibrium Model for the Relative Abundances of Microbial Phyla in a Hot Spring

Dick, Jeffrey M., Shock, Everett L., Badger, Jonathan H.

Journal:

Year:

2013

Language:

english

File:

PDF, 751 KB

english, 2013

26

Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification

Ibal, Jerald Conrad, Pham, Huy Quang, Park, Chang Eon, Shin, Jae-Ho, Badger, Jonathan H.

Journal:

Year:

2019

File:

PDF, 2.12 MB

2019

27

[IEEE 2018 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) - Madrid (2018.10.1-2018.10.5)] 2018 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) - A Framework for Dexterous Manipulation

Ku, Li Yang, Rogers, Jonathan, Strawser, Philip, Badger, Julia, Learned-Mille, Erik, Grupen, Rod

Year:

2018

Language:

english

File:

PDF, 479 KB

english, 2018

28

Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178 T (Phylum Thermodesulfobacteria )

Bhatnagar, Srijak, Badger, Jonathan H., Madupu, Ramana, Khouri, Hoda M., O’Connor, Elizabeth M., Robb, Frank T., Ward, Naomi L., Eisen, Jonathan A.

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 160 KB

english, 2015

29

The Antimicrobial Peptide CRAMP Is Essential for Colon Homeostasis by Maintaining Microbiota Balance

Yoshimura, Teizo, McLean, Mairi H., Dzutsev, Amiran K., Yao, Xiaohong, Chen, Keqiang, Huang, Jiaqiang, Gong, Wanghua, Zhou, Jiamin, Xiang, Yi, H. Badger, Jonathan, O'hUigin, Colm, Thovarai, Vishal, Te

Journal:

The Journal of Immunology

Year:

2018

Language:

english

File:

PDF, 2.45 MB

english, 2018

30

MetaSee: An Interactive and Extendable Visualization Toolbox for Metagenomic Sample Analysis and Comparison

Song, Baoxing, Su, Xiaoquan, Xu, Jian, Ning, Kang, Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 696 KB

english, 2012

31

Tissue displacements during acupuncture using ultrasound elastography techniques

Helene M. Langevin, Elisa E. Konofagou, Gary J. Badger, David L. Churchill, James R. Fox, Jonathan Ophir, Brian S. Garra

Journal:

Ultrasound in Medicine & Biology

Year:

2004

Language:

english

File:

PDF, 494 KB

english, 2004

32

Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera , across depth and season

Konotchick, Talina, Dupont, Christopher L., Valas, Ruben E., Badger, Jonathan H., Allen, Andrew E.

Journal:

New Phytologist

Year:

2013

Language:

english

File:

PDF, 887 KB

english, 2013

33

Dancing in Chains: Narrative and Memory in Political Theory.

Badger, Jonathan N., Dienstag, Joshua F.

Journal:

American Political Science Review

Year:

1998

Language:

english

File:

PDF, 313 KB

english, 1998

34

Familial dilated cardiomyopathy: Report of a large kindred and the use of signal averaging on asymptomatic individuals

Jonathan D. Bier, Chester A. Chmielewski, Donna Badger, Eric E. Berger

Journal:

Journal of the American College of Cardiology

Year:

1990

Language:

english

File:

PDF, 242 KB

english, 1990

35

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

Thompson, Julie D., Linard, Benjamin, Lecompte, Odile, Poch, Olivier, Badger, Jonathan

Journal:

Year:

2011

Language:

english

File:

PDF, 2.33 MB

english, 2011

36

dbOTU3: A new implementation of distribution-based OTU calling

Olesen, Scott W., Duvallet, Claire, Alm, Eric J., Badger, Jonathan H.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.80 MB

english, 2017

37

Expanding Cancer Prevention Education to National and International Audiences: The National Cancer Institute's Principles and Practice of Cancer Prevention and Control Annual Summer Course

Jessica M. Faupel-Badger, Dana M. van Bemmel, Jonathan S. Wiest, David E. Nelson

Journal:

Journal of Cancer Education

Year:

2011

Language:

english

File:

PDF, 127 KB

english, 2011

38

[IEEE 2017 IEEE International Conference on Big Data (Big Data) - Boston, MA, USA (2017.12.11-2017.12.14)] 2017 IEEE International Conference on Big Data (Big Data) - bigNN: An open-source big data toolkit focused on biomedical sentence classification

Tafti, Ahmad P., Behravesh, Ehsun, Assefi, Mehdi, LaRose, Eric, Badger, Jonathan, Mayer, John, Doan, AnHai, Page, David, Peissig, Peggy

Year:

2017

Language:

english

File:

PDF, 2.24 MB

english, 2017

39

Identification of Fast-Evolving Genes in the Scleractinian Coral Acropora Using Comparative EST Analysis

Iguchi, Akira, Shinzato, Chuya, Forêt, Sylvain, Miller, David J., Badger, Jonathan H.

Journal:

Year:

2011

Language:

english

File:

PDF, 417 KB

english, 2011

40

Resolution and Characterization of Distinct cpn60-Based Subgroups of Gardnerella vaginalis in the Vaginal Microbiota

Paramel Jayaprakash, Teenus, Schellenberg, John J., Hill, Janet E., Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 3.14 MB

english, 2012

41

Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification

Ibal, Jerald Conrad, Pham, Huy Quang, Park, Chang Eon, Shin, Jae-Ho, Badger, Jonathan H.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.12 MB

english, 2019

42

Reassessment of the Lineage Fusion Hypothesis for the Origin of Double Membrane Bacteria

Swithers, Kristen S., Fournier, Gregory P., Green, Anna G., Gogarten, J. Peter, Lapierre, Pascal, Badger, Jonathan H.

Journal:

Year:

2011

Language:

english

File:

PDF, 483 KB

english, 2011

43

Diet and Environment Shape Fecal Bacterial Microbiota Composition and Enteric Pathogen Load of Grizzly Bears

Schwab, Clarissa, Cristescu, Bogdan, Northrup, Joseph M., Stenhouse, Gordon B., Gänzle, Michael, Badger, Jonathan H.

Journal:

Year:

2011

Language:

english

File:

PDF, 414 KB

english, 2011

44

The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids

Ku, Chuan, Chung, Wan-Chia, Chen, Ling-Ling, Kuo, Chih-Horng, Badger, Jonathan H.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.45 MB

english, 2013

45

Selecting the branches for an evolutionary tree.: A polynomial time approximation scheme

Jonathan Badger, Paul Kearney, Ming Li, John Tsang, Tao Jiang

Journal:

Journal of Algorithms

Year:

2004

Language:

english

File:

PDF, 385 KB

english, 2004

46

Secobarbital in Humans Discriminating Triazolam Under Two-Response and Novel-Response Procedures

Jonathan B. Kamien, Warren K. Bickel, Brandi J. Smith, Gary J. Badger, John R. Hughes

Journal:

Pharmacology Biochemistry and Behavior

Year:

1997

Language:

english

File:

PDF, 129 KB

english, 1997

47

Reactive Uptake of N 2 O 5 by Aerosol Particles Containing Mixtures of Humic Acid and Ammonium Sulfate †

Badger, Claire L., Griffiths, Paul T., George, Ingrid, Abbatt, Jonathan P. D., Cox, R. Anthony

Journal:

Journal of Physical Chemistry A

Year:

2006

Language:

english

File:

PDF, 206 KB

english, 2006

48

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

Fedorova, Natalie D., Khaldi, Nora, Joardar, Vinita S., Maiti, Rama, Amedeo, Paolo, Anderson, Michael J., Crabtree, Jonathan, Silva, Joana C., Badger, Jonathan H., Albarraq, Ahmed, Angiuoli, Sam, Buss

Journal:

Year:

2008

Language:

english

File:

PDF, 572 KB

english, 2008

49

Comparative (Meta)genomic Analysis and Ecological Profiling of Human Gut-Specific Bacteriophage φB124-14

Ogilvie, Lesley A., Caplin, Jonathan, Dedi, Cinzia, Diston, David, Cheek, Elizabeth, Bowler, Lucas, Taylor, Huw, Ebdon, James, Jones, Brian V., Badger, Jonathan H.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.99 MB

english, 2012

50

SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records

Kong, Xiaoquan, Huang, Minyi, Duan, Renyan, Badger, Jonathan H.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

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